Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs3111485 chr5:171532373 A/G 1.67E-7 494 13.17 31.87 30.97 KM Plot
PRAD rs311604 chr5:138049363 C/T 6.47E-6 484 31.88 31.23 24.9 KM Plot
PRAD rs3204270 chr17:79682051 C/T 4.45E-5 494 30.93 31.13 19.23 KM Plot
PRAD rs3204962 chr12:52881337 G/T 0.000169 490 29.52 35.72 22.93 KM Plot
PRAD rs33758 chr3:45275635 A/G 0.000112 483 26.92 31.37 30.97 KM Plot
PRAD rs34030181 chr10:99419158 TA/T 5.58E-9 483 31.37 29.17 24.67 KM Plot
PRAD rs34034499 chr17:79638568 G/C 2.28E-8 491 30.48 31.62 25.67 KM Plot
PRAD rs34040967 chr5:171531685 CGCT/C 1.66E-7 493 30.87 32 13.17 KM Plot
PRAD rs34046527 chr16:5006556 TGC/T 0.000148 484 31.27 29.95 26.37 KM Plot
PRAD rs34061327 chr9:72862972 T/C 1.73E-5 493 30.8 31.35 22.45 KM Plot
PRAD rs34085021 chr7:43565458 G/A 4.45E-6 485 31.23 31.18 14.03 KM Plot
PRAD rs34104510 chr17:62986016 AT/A 9.09E-9 484 30.8 31.37 19.63 KM Plot
PRAD rs34114557 chr5:150841935 C/CT 8.96E-5 481 30.3 33.47 31.15 KM Plot
PRAD rs34119504 chr8:71545214 C/T 4.56E-5 493 31.13 31 24.27 KM Plot
PRAD rs34120696 chr8:143423134 T/C 0.000132 483 30.93 30.77 31.87 KM Plot